Folded RNAs
Antu Dey with Dr. William James (Sir William Dunn School of Pathology) and Prof. Andrew Lever (University of Cambridge)


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rna

  Folded RNAs are important for the life cycles of many viral pathogens and have provided us with long-term crystallographic challenges. Our work at present is focussed on RNAs derived from HIV (from which we have small crystals) and synthetic RNA aptamers designed to block binding of HIV gp120 to CD4. This work is currently at the stage of design of suitable crystallographic targets and determination of the affinities and kinetics that characterise aptamer-gp120 binding.

 

Rev binds specifically to a purine loop in the SL1 region of the HIV-1 leader RNA.
Gallego et al., J Biol Chem. 2003 Oct 10;278(41): 40385-91.